
DELs in Cells – Snap: Fast, Affordable Hit Discovery
Summary
Snap is our fastest, most affordable route to real chemical starting points built for teams who want hits without a big campaign.
What you get: A screening report plus chemical structures for your top 20 hits, ready for confirmation
Who it is for: Startups and lean teams with tractable targets, or anyone who wants an early lead on a fixed, transparent budget. No purified protein is required as the screening runs in living cells.
What you keep: You own all nominated chemical series and foreground IP, with no royalties or downstream obligation.
Service in brief
- 1. You provide the amino acid sequence of the target protein(s)
- 2. We conduct an expression study
- 3. We conduct the screening, perform the analysis and provide a report, and chemical structure information for 20 top hits
Timelines
Expression study: 4 weeks
Screening: 4 weeks
Keys
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Screen is conducted in a living cell
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Screen is conducted using 2 screening slots (2 constructs or 2 DELs) in parallel
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Chemical structure information for 20 top hits
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More physiologically relevant conditions
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Lower attrition rate (assumed)
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Broader target space – no need for purified target protein
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High success rate (>70%)
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Shorter TAT
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Identifies hits and hit families
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Low false positive rates (100% match between DNA code and compound)
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Applicable across disease areas and target classes (no structural information required)
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Straightforward and transparent data analysis
Business Model
- Simple fee-based plan with no reach-through and royalty payments
- Hit exclusivity and transparent cost structure – Client owns all hits and foreground IP without any downstream financial obligations
- The compensation plan comprises one payment as a transparent cost structure covering everything
- The project flow is rapid and straightforward:
- Client provides the amino acid sequence for the target protein
- We express the protein and screen it with two slots e.g. varying which libraries are screened or which constructs are used
- Vipergen delivers a report including chemical structure information of top 20 hits
- Top 20 hits become exclusive for the client who owns all foreground IP without royalty payment or other downstream financial obligations
- Notes:
- A 90% refund is issued if we fail to express the target protein
- Positive and negative controls are provided by Vipergen
DELs
Vipergen’s high fidelity DELs are synthesized using robust chemistry and with a purification step after each chemical transformation, thus providing 100% correspondence between code and compound (no truncates).
Key drivers for library design
- Chemical diversity
- Physicochemical properties
- Fidelity
- Hit resynthesis (off DNA)
| Lib048 | Lib058 | Lib081 | Lib100 | |
|---|---|---|---|---|
| Size & Diversity | ||||
| Size (million compounds) | 551 | 603 | 381 | 511 |
| Building blocks | 1616 | 1339 | 1138 | 1043 |
| Designer building blocks | 933 | 657 | 617 | 635 |
| Scaffolds | 403 | 353 | 295 | 323 |
| Avg Fsp3 | 0.5 | 0.6 | 0.6 | 0.5 |
| Suitability & Risk | ||||
| Suitability for difficult targets | ★★★ | ★★☆ | ★☆☆ | ★★★ |
| Toxicophores (%) | 1.2 | 1.3 | 1.1 | 2.2 |
| Attachment Chemistry | ||||
| Acylation | ● | ● | ● | ● |
| Reductive amination | ● | ● | ● | ● |
| SNAr | ● | |||
| 1 cyclic tertiary amide (%) | 47 | 50 | 52 | 37 |
| 2 cyclic tertiary amides (%) | 34 | 33 | 57 | |
| Average Physicochemical Properties | ||||
| MW (Da) | 595 | 503 | 525 | 598 |
| cLogP | 2.6 | 0.6 | 0.9 | 1.6 |
| HBA | 8.5 | 6.0 | 6.2 | 6.9 |
| HBD | 2.8 | 2.8 | 2.9 | 2.5 |
| Rotatable bonds | 10.3 | 8.3 | 8.9 | 9.2 |
| TPSA (Ų) | 151 | 135 | 137 | 144 |

Target classes
Our streamlined DNA-encoded chemical library (DEL) screening service has successfully delivered hits and leads against numerous target classes. Including:
- Kinases
- Oxidoreductase Proteases
- Hydrolases
- Isomerases
- Transferases
- Lyases
- Phosphatases
- Transcription factors
- Synthases
- E3 biquitin ligases
- Deubiquitinases (DUBs)
- Helicases
- Polymerases
- Nucleotide exchange factors
- Decarboxylases
- Ligases
- Integral membrane proteins
- G protein-coupled receptors (GPCRs)
- Ion channels
- Single-pass membrane proteins
- Nuclear receptors
- Cytosolic receptors
- Extracellular receptors
- Transcription factors
- E3 ligases
- Deubiquitinases (DUBs)
- Antibodies
- Cytokines
- Interleukins
- Growth factors
- Carrier proteins
- Adaptor proteins
- Oncoproteins
- Histone binders
- Methyl transferases
- Acetyltransferase
- Demethylases
- Deacetylases
- Viral proteins (enzymes and coat proteins)
- Bacterial proteins (enzymes and receptors)
- Fungal proteins (enzymes and receptors)
Technical information
Frequently Asked Questions
The screening report and top 25 hits are delivered within 30 business days
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